Prepints by The Levin Lab

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doi title year authors authorCount platform
10.48550/arXiv.2411.15243 Bio-inspired AI: Integrating Biological Complexity into Artificial Intelligence 2024 Dehghani, N., Levin, M. 2 arxiv
10.31219/osf.io/tb5ys Harnessing the analog computing power of regulatory networks with the Regulatory Network Machine 2024 Pietak, A., Levin, M. 2 OSF Preprints
10.48550/arXiv.2411.13420 Heuristically Adaptive Diffusion-Model Evolutionary Strategy 2024 Hartl, B., Zhang, Y., Hazan, H., Levin M. 3 arxiv
10.31219/osf.io/3fdya Cognitive Glues Are Shared Models of Relative Scarcities: The Economics of Collective Intelligence 2024 Lyons, B.F., Levin, M. 2 OSF Preprints
10.31219/osf.io/fqm7r Robustness of the Mind-Body Interface: case studies of unconventional information flow in the multiscale living architecture 2024 Kofman, K., Levin, M. 2 OSF Preprints
10.31219/osf.io/whm5u The morphological, behavioral, and transcriptomic life cycle of Anthrobots 2024 Gumuskaya, G., Davey, N., Srivastava, P., Bender, A., Pio-Lopez, L., Hazel, D., Levin, M. 7 OSF Preprints
10.31219/osf.io/gz3km Discussions of machine vs. living intelligence need more clarity 2024 Levin, M., Rouleau, N. 2 OSF Preprints
10.31219/osf.io/gjxhn Temporal Depth in a Coherent Self and in Depersonalization: Theoretical Model 2024 Tolchinsky, A., Levin, M., Chris Fields, C., Da Costa, L., Murphy, R., Friedman, D., Pincus, D. 7 OSF Preprints
10.31219/osf.io/py86e Bioelectric Characterization of Senescing Human Keratinocytes 2024 Sediqi, H., Levin, M. 2 OSF Preprints
10.5281/zenodo.8416764 Requirements for self organization 2024 Sacco, F., Sakthivadivel, D., Levin, M. 3 Github
10.48550/arXiv.2410.02543 Diffusion Models are Evolutionary Algorithms 2024 Zhang, Y., Hartl, B., Hazen, H., Levin, M. 4 arxiv
10.48550/arXiv.2409.13254 Emergent Collective Reproduction via Evolving Neuronal Flocks 2024 Le, N.H., Watson, R. A., Buckley, C., Levin, M. 4 arXiv
10.31219/osf.io/kdjtx Uncertainty Minimization and Pattern Recognition in Volvox Carteri andVolvox Aureus 2024 Kuchling, F., Singh, I., Daga, M., Zec, S., Kunen, A., Levin, M. 6 OSF Preprints
10.31219/osf.io/n2jre Xenobot Transcriptomics: Gene Expression Changes in wild-type cells forming a synthetic biobot 2024 Pai, V. P., Pio-Lopez, L., Sperry, M. M., Erickson, P., Levin, M. 5 OSF Preprints
10.20944/preprints202408.2041.v1 The Role of Bioelectrical Patterns in Regulative Morphogenesis: An Evolutionary Simulation and Validation in Planarian Regeneration 2024 Hansali, S., Pio-Lopez, L., LaPalme, J. V, Levin, M. 4 Preprints.org
10.31219/osf.io/yq9xe The multiscale wisdom of the body: collective intelligence as a tractable interface for next-generation biomedicine 2024 Levin, M. 1 OSF Preprints
10.20944/preprints202407.1896.v1 Open Problems in Synthetic Multicellularity 2024 Sole, R., Conde, N., Pla Mauri, J., Garcia Ojalvo, J., Montserrat, N., Levin, M. 6 Preprints.org
10.48550/arXiv.2407.09438 Neuroevolution of Decentralized Decision-Making in N-Bead Swimmers Leads to Scalable and Robust Collective Locomotion 2024 Hartl, B., Levin, M., Zöttl, A.(2024),  3 arxiv
10.31219/osf.io/d78wb Universal Multilayer Network Embedding Reveals a Causal Link Between GABA Neurotransmitter and Cancer 2024 Pio-Lopez, L., Levin, M. (2024),  2 OSF Preprints
10.1101/2024.05.09.593467 Revealing non-trivial information structures in aneural biological tissues via functional connectivity 2024 Blackiston, D., Dromiack, H., Grasso, C., Varley, T. F., Moore, D. G., Srinivasan, K., Sporns, O., Bongard, J., Levin, M., Walker, S.I. (2024),  10 bioRxiv
10.31234/osf.io/ez263 AI: a Bridge toward Diverse Intelligence and Humanity’s Future 2024 Levin, M. 1 PsyArXiv
10.31219/osf.io/sp9kf Evolutionary Implications of Multi-Scale Intelligence 2024 Hartl, B., Risi, S., and Levin, M. 3 OSF Preprints
10.31219/osf.io/9y8ku Stress Sharing as Cognitive Glue for Collective Intelligences: a computational model of stress as a coordinator for morphogenesis 2024 Shreesha, L., and Levin, M. 2 OSF Preprints
10.31219/osf.io/4b2wj Self-improvising Memories: a perspective on memories as agential, dynamically-reinterpreting cognitive glue 2024 Levin, M. 1 OSF Preprints
10.1101/2024.02.16.580248 An ability to respond begins with inner alignment: How phase synchronisation effects transitions to higher levels of agency 2024 Tissot, T., Levin, M., Buckley, C., and Watson, R. 4 bioRxiv
10.31219/osf.io/qkuvf Bioelectric Pharmacology of Cancer: A Meta-Analysis of Ion Channel Drugs Affecting the Cancer Phenotype 2024 Kofman, K., and Levin, M. 2 OSF Preprints
10.31219/osf.io/e5d4u Classical Sorting Algorithms as a Model of Morphogenesis: self-sorting arrays reveal unexpected competencies in a minimal model of basal intelligence 2023 Zhang, T., Goldstein, A., and Levin, M. 3 OSF Preprints
10.31219/osf.io/s6thq AI-driven Automated Discovery Tools Reveal Diverse Behavioral Competencies of Biological Networks 2023 Etcheverry, M., Moulin-Frier, C., Oudeyer, P.-Y., and Levin, M. 4 OSF Preprints
10.1101/2023.10.10.561754 Programmable delivery of fluoxetine via wearable bioelectronics for wound healing in vivo 2023 Li, H., Yang, H.-Y., Asefifeyzabadi, N., Baniya, P., Medina Lopez, A., Gallegos, A., Zhu, K., Hsieh, H.-C., Nguyen, T., Hernandez, C., Zlobina, K., Recendez, C., Tebyani, M., CarriĂłn, H., Selberg, J., Luo, L., Alhamo, M. A., Soulika, A. M., Levin, M., Norouzi, N., Gomez, M., Zhao, M., Teodorescu, M., Isseroff, R. R., and Rolandi, M. 25 bioRxiv
10.5281/zenodo.8416764 Requirements for self organization: What do you need to have a structure emerge spontaneously? 2023 Sacco, F., Sakthivadivel, D., and Levin, M. 3 Github
10.31219/osf.io/269e5 Machine Learning for Hypothesis Generation in Biology and Medicine: Exploring the latent space of neuroscience and developmental bioelectricity 2023 O’Brien, T., Stremmel, J., Pio-Lopez, L., McMillen, P., Rasmussen-Ivey, C., and Levin, M. 6 OSF Preprints
10.48550/arXiv.2307.08452 SBMLtoODEjax: efficient simulation and optimization of ODE SBML models in JAX 2023 Etcheverry, M., Levin, M., Moulin-Frier, C., and Oudeyer, P.-Y. 4 arxiv
10.31219/osf.io/ps987 Embryos Assist Each Other’s Morphogenesis: calcium and ATP signaling mechanisms in collective resistance to teratogens 2023 Tung, A., Sperry, M., Clawson, W., Pavuluri, A., Bulatao, S., Yue, M., Flores, R. M., Pai, V. McMillen, P., Kuchling, F., and Levin, M. 10 OSF Preprints
10.31219/osf.io/wkhx4 Aging as a morphostasis defect: a developmental bioelectricity perspective 2023 Pio-Lopez, L., and Levin, M. 2 OSF Preprints
10.31234/osf.io/g8q5d Nested Selves: Self-Organisation and Shared Markov Blankets in Prenatal Development in Humans 2023 Ciaunica, A., Levin, M., Rosas, F., and Friston, K. 4 PsyArXiv
10.20944/preprints202305.1160.v1 The Yin and Yang of Breast Cancer: Ion Channels as Determinants of Left-Right Functional Differences 2023 Masuelli, S., Real, S., McMillen, P., Oudin, M., Levin, M., and Roqué, M. 6 Preprints.org
10.48550/arXiv.2303.01514 Control flow in active inference systems 2023 Fields, C., Fabrocini, F., Friston, K., Glazebrook, J. F., Hazan, H., Levin, M. and Marcianò, A. 6 arXiv
10.31219/osf.io/p23se Darwin’s Agential Materials: evolutionary implications of multi-scale competency in developmental biology 2023 Levin, M. 1 OSF Preprints
10.31234/osf.io/pjrd2 Towards an Ethics of Autopoietic Technology: Stress, Care, and Intelligence 2023 Witkowski, O., Doctor, T., Solomonova, E., Duane, B., and Levin, M. 5 PsyArXiv
10.1101/2023.02.27.530270 Identification of a pharmaceutical biostasis inducer that slows metabolism in multiple vertebrates that do not hibernate 2023 Sperry, M. M., Charrez, B., Fotowat, H., Gardner, E., Pilobello, K., Izadifar, Z., Lin, T., Kuelker, A., Kaki, S., Lewandowski, M., Lightbown, S., Martinez, R., Marquez, S., Sesay, A., Shcherbina, K., Takeda, T., Andrijauskaite, K., Cisneros, E., Lopez, R., Cano, I., Maxwell, Z., Veraza, R., Bunegin, L., Percival, T. J., Yracheta, J., Pena, J. J., Wood, D. M., Homas, Z. T., Hinshaw, C. J., Cox-Hinshaw, J., Parry, O. G., Sleeter, J. J., Weitzel, E., Levin, M., Super, M., Novak, R., and Ingber, D. E. 37 bioRxiv
10.1101/2023.01.08.523164 Information integration during bioelectric regulation of morphogenesis in the embryonic frog brain 2023 Manicka, S., Pai, V. P, and Levin, M. 3 bioRxiv
10.31219/osf.io/7hxnp Morphoceuticals: perspectives for discovery of drugs targeting anatomical control mechanisms in regenerative medicine, cancer, and aging 2022 Pio-Lopez, L., and Levin, M. 2 OSF Preprints
10.48550/arXiv.2212.10675 There’s Plenty of Room Right Here: Biological Systems as Evolved, Overloaded, Multi-scale Machines 2022 Bongard, J., and Levin, M. 2 arxiv
10.48550/arXiv.2211.08522 The scaling of goals via homeostasis: an evolutionary simulation, experiment and analysis 2022 Pio-Lopez, L., Bischof, J., LaPalme, J. V., and Levin, M. 4 arxiv
10.31219/osf.io/c6n9r Cellular Signaling Pathways as Plastic, Proto-cognitive Systems: Implications for Biomedicine 2022 Mathews, J., Chang, J., Devlin, L., and Levin, M. 4 OSF Preprints
10.48550/arXiv.2211.01313 Closing the Loop on Morphogenesis: A Mathematical Model of Morphogenesis by Closed-Loop Reaction-Diffusion 2022 Grodstein, J., and Levin, M. 2 arxiv
10.1101/2022.10.23.513361 Exploring The Behavior of Bioelectric Circuits using Evolution Heuristic Search 2022 Hazan, H., and Levin, M. 2 bioRxiv
10.31234/osf.io/rdt7f Regulative development as a model for origin of life and artificial life studies 2022 Fields, C., and Levin, M. 2 PsyArXiv
10.31234/osf.io/fgcy5 The Brain is not Mental! Coupling Neuronal and Immune Cellular Processing in Human Organisms 2022 Ciaunica, A., and Levin, M. 2 PsyArXiv
10.1101/2022.08.04.502707 Motile Living Biobots Self-Construct from Adult Human Somatic Progenitor Seed Cells 2022 Gumuskaya, G., Srivastava, P., Cooper, B. G., Lesser, H., Semegran, B., Garnier, S., and Levin, M. 7 bioRxiv
10.48550/arXiv.2207.14729 Competency of the Developmental Layer Alters Evolutionary Dynamics in an Artificial Embryogeny Model of Morphogenesis 2022 Shreesha, L., and Levin, M. 2 arxiv
10.1101/2021.12.22.473903 The nonlinearity of regulation in biological networks 2022 Manicka, S., Johnson, K., Levin, M., and Murrugarra, D. 4 bioRxiv
10.20944/preprints202207.0376.v1 Information Theory as an experimental tool for integrating disparate biophysical signaling modules 2022 McMillen, P., and Levin, M. 2 Preprints.org
10.31234/osf.io/4gp6c Active Inference, Morphogenesis, and Computational Psychiatry 2022 Pio-Lopez, L., Kuchling, F., Tung, A., Pezzulo, G., and Levin, M. 5 PsyArXiv
10.20944/preprints202207.0083.v1 Screening biophysical sensors and actuators that influence wound healing in human induced pluripotent stem cell-derived neurons 2022 Pai, V. P., Cooper, B., and Levin, M. 3 Preprints.org
10.48550/arXiv.2207.00880 Biological Robots: Perspectives on an Emerging Interdisciplinary Field 2022 Blackiston, D., Kriegman, S., Bongard, J., and Levin, M. 4 arxiv
10.31219/osf.io/xrv8h Synthetic Morphology via Active and Agential Matter 2022 Davies, J., and Levin, M. 2 OSF Preprints
10.31234/osf.io/hqc9b Collective Intelligence of Morphogenesis as a Teleonomic Process 2022 Levin, M. 1 PsyArXiv
10.31234/osf.io/87nzu Competency in Navigating Arbitrary Spaces: Intelligence as an Invariant for Analyzing Cognition in Diverse Embodiments 2022 Fields, C., and Levin, M. 2 PsyArxiv
10.1101/2022.03.20.485056doi Target-agnostic discovery of Rett Syndrome therapeutics by coupling computational network analysis and CRISPR-enabled in vivo disease modeling 2022 Novak, R., Lin, T., Kaushal, S., Sperry, M., Vigneault, F., Gardner, E., Loomba, S., Shcherbina, K., Keshari, V. , Dinis, A., Vasan, A., Chandrasekhar, V., Takeda, T., Turner, J. R., Levin, M., and Ingber, D. E. 16 bioRxiv
10.48550/arXiv.2202.07132 Memory via Temporal Delays in weightless Spiking Neural Network 2022 Hazan, H., Caby, S., Earl, C., Siegelmann, H., and Levin, M. 5 arxiv
10.48550/arXiv.2201.00921 Neurons as hierarchies of quantum reference frames 2022 Fields, C., Glazebrook, J. F., and Levin, M. 3 arXiv
MISSING-MindRxiv Biology, Buddhism, and AI: Care as the Driver of Intelligence 2022 Doctor, T., Witkowski, O., Solomonova, E., Duane, B., and Levin, M. 5 MindRxiv
10.31234/osf.io/t6e8p Technological Approach to Mind Everywhere (TAME): an experimentally-grounded framework for understanding diverse bodies and minds 2021 Levin, M. 1 PsyArXiv
10.1101/2021.09.30.462576 Enhancers of host immune tolerance to bacterial infection discovered using linked computational and experimental approaches 2021 Sperry, M., Novak, R., Keshari, V., Dinis, A. L. M., Cartwright, M. J., Camacho, D. M., Pare, J-F, Super, M., Levin, M., and Ingber, D. E. 10 bioRxiv
10.1101/2021.10.17.464734 Physarum polycephalum: Establishing an Assay for Testing Decision-making Under Shifting Somatic Boundaries 2021 Levin, S. P., and Levin, M. 2 bioRxiv
10.1101/2021.04.06.438714 Potassium channel-driven bioelectric signaling regulates metastasis in triple-negative breast cancer 2021 Payne, S. K., Ram, P., Srinivasan, D. H., Le, T. T., Levin, M., and Oudin, M. J. 6 bioRxiv
10.48550/arXiv.2103.17061 Metabolic limits on classical information processing by biological cells 2021 Fields, C., and Levin, M. 2 arxiv
10.48550/arXiv.2103.04876 Scale invariant robot behavior with fractals 2021 Kriegman, S., Nasab, A. M., Blackiston, D., Steele, H., Levin, M., Kramer-Bottiglio, R., and Bongard, R. 7 arXiv
10.1101/2021.01.15.426822 Formation and Spontaneous Long-Term Repatterning of Headless Planarian Flatworms 2021 Bischof, J., LaPalme, J., Miller, K., Morokuma, J., Williams, K., Fields, C., and Levin, M. 7 bioRxiv
10.1101/336461 Turing-like patterns can arise from purely bioelectric mechanisms 2020 Brodsky, M. 1 bioRxiv
10.1101/2020.02.05.936294 Epigenetic immune-modulation by Histone Deacetylase Activity (HDAC) of tissue and organ regeneration in Xenopus laevis 2020 Pentagna, N., Soares dos Santos, F., Martins de Almeida, F., Abreu, J. G., Levin, M., and Carneiro, K. 6 bioRxiv
MISSING-BindsNET BindsNET - A Framework for Spiking Neuronal Simulation 2020 Hazan, H., Levin, M. 2 Medium
10.1101/2020.05.03.074419 Evolution leads to emergence: An analysis of protein interactomes across the tree of life 2020 Hoel, E., Klein, B., Swain, A., Grebenow, R., Levin, M. 5 bioRxiv
10.1101/2020.03.20.985523 Mechanosensation Mediates Long-Range Spatial Decision-Making in an Aneural Organism 2020 Murugan, N., Kaltman, D., Jin, H., Chien, M., Flores, R., Nguyen, C., Tuzoff, D., Minabutdinov, A., Kane, A., Novak, R., Ingber, D. 11 bioRxiv
10.48550/arXiv.1911.10290 Scalable sim-to-real transfer of soft robot designs 2020 Kriegman, S., Nasab, A. M., Shah, D., Steele, H., Branin, G., Levin, M., Bongard, J., and Kramer-Bottiglio, R. 8 arXiv
10.1101/2020.01.22.916072 S-adenosylhomocysteine hydrolase regulates anterior patterning in 2020 Reinmets, K., Bischof, J., Taketa, E., Levin, M., and Fuchs, S. M. 5 bioRxiv
10.15607/RSS.2019.XV.028 Automated shapeshifting for function recovery in damaged robots 2019 Kriegman, S., Walker, S., Shah, D., Levin, M., Kramer-Bottiglio, R., and Bongard, J. 6 arxiv
10.1038/s41598-019-54859-8 Modeling somatic computation with non-neural bioelectric networks 2019 Manicka, S., and Levin, M. 2 arxiv
MISSING-2019110348 Bistability of Somatic Pattern Memories: Stochastic Outcomes in Bioelectric Circuits Underlying Regeneration 2019 Pezzulo, G., LaPalme, J., Durant, F., and Levin, M. 4 Preprints.org
10.1101/842948 von Willebrand Factor D and EGF Domains is an evolutionarily conserved and required feature of blastemas capable of multi-tissue appendage regeneration 2019 Leigh, N. D., Sessa, S., Dragalzew, A. C., Payzin-Dogru, D., Sousa, J. F., Aggouras, A., Johnson, K., Dunlap, G. S., Haas, B. J., Levin, M., Schneider, I., and Whited, J. L. 12 bioRxiv
10.1101/820613 A comprehensive conceptual and computational dynamics framework for Autonomous Regeneration Systems 2019 Minh-Thai, T.N., Samarasinghe, S., and Levin, M. 3 bioRxiv
10.1101/815688 Nervous System and Tissue Polarity Dynamically Adapt to New Morphologies in Planaria 2019 Bischof, J., Day, M.E., Miller, K.A., LaPalme, J., and Levin, M. 5 bioRxiv
10.1101/785444 Defined extracellular ionic solutions to study and manipulate the cellular resting membrane potential 2019 Bonzanni, M., Payne, S. L., Adelfio, M., Kaplan, D. L., Levin, M., and Oudin, M. J. 6 bioRxiv
10.1101/052191 Cellular Migration May Exhibit Intrinsic Left-Right Asymmetries: A meta-analysis 2018 Sullivan, K. G., Vandenberg, L. N., and Levin, M. 3 bioRxiv
10.1101/186650 Effects of Ivermectin exposure on regeneration of D. dorotocephala planaria 2017 Ferenc, N. N., and Levin, M. 2 bioRxiv
10.1101/052191 From cytoskeletal dynamics to organ asymmetry: a non-linear, regulative pathway underlies left-right patterning 2016 McDowell, G. S., Rajadurai, S., and Levin, M. 3 bioRxiv